| 1 | Ryan FitzpatrickPlace 1 · Grade 11 · The Nueva School (CC) | 11 | The Nueva School (CC) | 4:27.58 |
| 2 | Henry WittPlace 2 · Grade 11 · Lowell (SF) | 11 | Lowell (SF) | 4:27.73 |
| 3 | Ethan KraskaPlace 3 · Grade 10 · San Francisco University (NC) | 10 | San Francisco University (NC) | 4:31.42 |
| 4 | Ben JonesPlace 4 · Grade 12 · San Francisco University (NC) | 12 | San Francisco University (NC) | 4:35.15 |
| 5 | Ben FriedlandPlace 5 · Grade 10 · San Francisco University (NC) | 10 | San Francisco University (NC) | 4:37.00 |
| 6 | Georges BikahiPlace 6 · Grade 12 · Galileo Academy of Science & T | 12 | Galileo Academy of Science & T | 4:37.94 |
| 7 | Malcolm Barry-KaoPlace 7 · Grade 11 · Lowell (SF) | 11 | Lowell (SF) | 4:38.77 |
| 8 | Devin PricePlace 8 · Grade 12 · San Domenico (NC) | 12 | San Domenico (NC) | 4:42.05 |
| 9 | Samuel LeePlace 9 · Grade 10 · The King's Academy | 10 | The King's Academy | 4:42.94 |
| 10 | Reese TerrellPlace 10 · Grade 10 · Convent & Stuart Hall (NC) | 10 | Convent & Stuart Hall (NC) | 4:43.03 |
| 11 | Wade GarouttePlace 11 · Grade 12 · San Francisco University (NC) | 12 | San Francisco University (NC) | 4:43.59 |
| 12 | Sasha KalosPlace 12 · Grade 11 · Washington (George) (SF) | 11 | Washington (George) (SF) | 4:43.96 |
| 13 | Jack BrilliantPlace 13 · Grade 12 · San Francisco University (NC) | 12 | San Francisco University (NC) | 4:44.66 |
| 14 | Charlie KostPlace 14 · Grade 10 · San Francisco University (NC) | 10 | San Francisco University (NC) | 4:45.54 |
| 15 | Leor HershPlace 15 · Grade 11 · Bay School of San Francisco (N | 11 | Bay School of San Francisco (N | 4:45.64 |
| 16 | Jaden HuangPlace 16 · Grade 12 · Lowell (SF) | 12 | Lowell (SF) | 4:46.59 |
| 17 | Rio MurphyPlace 17 · Grade 11 · Pacific Bay Christian (CC) | 11 | Pacific Bay Christian (CC) | 4:47.88 |
| 18 | Kainoa NewtonPlace 18 · Grade 11 · Bay School of San Francisco (N | 11 | Bay School of San Francisco (N | 4:47.94 |
| 19 | Matteo MorettiPlace 19 · Grade 10 · San Francisco University (NC) | 10 | San Francisco University (NC) | 4:48.18 |
| 20 | Shepard PetersenPlace 20 · Grade 12 · Galileo Academy of Science & T | 12 | Galileo Academy of Science & T | 4:49.44 |
| 21 | Quinn LukPlace 21 · Grade 11 · Lowell (SF) | 11 | Lowell (SF) | 4:50.54 |
| 22 | Sabry BowdenPlace 22 · Grade 10 · Convent & Stuart Hall (NC) | 10 | Convent & Stuart Hall (NC) | 4:50.61 |
| 23 | Jonathan HoPlace 23 · Grade 10 · The Nueva School (CC) | 10 | The Nueva School (CC) | 4:50.67 |
| 24 | Teddy GaillardPlace 24 · Grade 12 · The Nueva School (CC) | 12 | The Nueva School (CC) | 4:50.90 |
| 25 | Dylan WelchPlace 25 · Grade 12 · The King's Academy | 12 | The King's Academy | 4:51.63 |
| 26 | Julian AndersonPlace 26 · Grade 11 · Convent & Stuart Hall (NC) | 11 | Convent & Stuart Hall (NC) | 4:52.06 |
| 27 | Dexter TuPlace 27 · Grade 12 · Lowell (SF) | 12 | Lowell (SF) | 4:52.66 |
| 28 | Wilder KagayPlace 28 · Grade 12 · San Francisco University (NC) | 12 | San Francisco University (NC) | 4:55.79 |
| 29 | Woody SzydlikPlace 29 · Grade 10 · Lowell (SF) | 10 | Lowell (SF) | 4:56.70 |
| 30 | Wyatt RutterPlace 30 · Grade 12 · San Francisco University (NC) | 12 | San Francisco University (NC) | 4:57.02 |
| 31 | Caleb FigueiraPlace 31 · Grade 11 · The King's Academy | 11 | The King's Academy | 4:57.82 |
| 32 | Gabriel BernsteinPlace 32 · Grade 12 · The Nueva School (CC) | 12 | The Nueva School (CC) | 4:57.83 |
| 33 | Hugo Tao OngPlace 33 · Grade 9 · San Francisco University (NC) | 9 | San Francisco University (NC) | 4:58.05 |
| 34 | Levi MyersPlace 34 · Grade 10 · Lowell (SF) | 10 | Lowell (SF) | 4:58.15 |
| 35 | Sam WestPlace 35 · Grade 11 · Bay School of San Francisco (N | 11 | Bay School of San Francisco (N | 4:58.31 |
| 36 | Benjamin LodenquaiPlace 36 · Grade 10 · The King's Academy | 10 | The King's Academy | 4:58.36 |
| 37 | Michael HainbuchPlace 37 · Grade 9 · Lowell (SF) | 9 | Lowell (SF) | 4:58.60 |
| 38 | Avery HollandPlace 38 · Grade 9 · Washington (George) (SF) | 9 | Washington (George) (SF) | 4:59.38 |
| 39 | Ambrose SiglerPlace 39 · Grade 11 · The King's Academy | 11 | The King's Academy | 4:59.72 |
| 40 | Elias TorresPlace 40 · Grade 9 · Convent & Stuart Hall (NC) | 9 | Convent & Stuart Hall (NC) | 5:00.87 |
| 41 | Emmett DavitianPlace 41 · Grade 11 · San Francisco University (NC) | 11 | San Francisco University (NC) | 5:01.38 |
| 42 | Kyle LeePlace 42 · Grade 11 · Convent & Stuart Hall (NC) | 11 | Convent & Stuart Hall (NC) | 5:01.76 |
| 43 | Kenneth CheungPlace 43 · Grade 10 · Lowell (SF) | 10 | Lowell (SF) | 5:02.01 |
| 44 | Nathan LillyPlace 44 · Grade 11 · The King's Academy | 11 | The King's Academy | 5:02.15 |
| 45 | Max LesterPlace 45 · Grade 10 · Galileo Academy of Science & T | 10 | Galileo Academy of Science & T | 5:02.62 |
| 46 | Matthew Gatz-LevinePlace 46 · Grade 10 · Bay School of San Francisco (N | 10 | Bay School of San Francisco (N | 5:03.24 |
| 47 | Vivek NarottamPlace 47 · Grade 10 · San Francisco University (NC) | 10 | San Francisco University (NC) | 5:03.85 |
| 48 | Matthew LuhPlace 48 · Grade 10 · The King's Academy | 10 | The King's Academy | 5:04.25 |
| 49 | William CreasyPlace 49 · Grade 10 · San Francisco University (NC) | 10 | San Francisco University (NC) | 5:04.33 |
| 50 | Ian TingleyPlace 50 · Grade 10 · Lowell (SF) | 10 | Lowell (SF) | 5:05.09 |
| 51 | Ashwin PrabhuPlace 51 · Grade 9 · The Nueva School (CC) | 9 | The Nueva School (CC) | 5:07.31 |
| 52 | Malcolm JungPlace 52 · Grade 11 · Washington (George) (SF) | 11 | Washington (George) (SF) | 5:07.65 |
| 53 | Edward FontainePlace 53 · Grade 9 · Convent & Stuart Hall (NC) | 9 | Convent & Stuart Hall (NC) | 5:07.86 |
| 54 | Adrian LuPlace 54 · Grade 12 · Washington (George) (SF) | 12 | Washington (George) (SF) | 5:09.90 |
| 55 | Tomas ChurchPlace 55 · Grade 12 · Soquel (CC) | 12 | Soquel (CC) | 5:12.32 |
| 56 | Noah TorresPlace 56 · Grade 11 · Convent & Stuart Hall (NC) | 11 | Convent & Stuart Hall (NC) | 5:12.87 |
| 57 | Ethan LouiePlace 57 · Grade 10 · Lowell (SF) | 10 | Lowell (SF) | 5:13.76 |
| 58 | JJ GargPlace 58 · Grade 9 · Convent & Stuart Hall (NC) | 9 | Convent & Stuart Hall (NC) | 5:14.84 |
| 59 | Baxter DamnerPlace 59 · Grade 10 · Bay School of San Francisco (N | 10 | Bay School of San Francisco (N | 5:14.86 |
| 60 | Thomas GadaczPlace 60 · Grade 9 · Pacific Bay Christian (CC) | 9 | Pacific Bay Christian (CC) | 5:15.35 |
| 61 | Quinn CarrPlace 61 · Grade 9 · Bay School of San Francisco (N | 9 | Bay School of San Francisco (N | 5:16.88 |
| 62 | Micah SomsoukPlace 62 · Grade 12 · Bay School of San Francisco (N | 12 | Bay School of San Francisco (N | 5:17.17 |
| 63 | Luke ThomasPlace 63 · Grade 9 · Washington (George) (SF) | 9 | Washington (George) (SF) | 5:17.45 |
| 64 | Jonas OhPlace 64 · Grade 9 · Lowell (SF) | 9 | Lowell (SF) | 5:18.15 |
| 65 | Conner LeePlace 65 · Grade 11 · Convent & Stuart Hall (NC) | 11 | Convent & Stuart Hall (NC) | 5:18.25 |
| 66 | Aaron NinanPlace 66 · Grade 10 · The King's Academy | 10 | The King's Academy | 5:18.32 |
| 67 | Roland NayPlace 67 · Grade 10 · The King's Academy | 10 | The King's Academy | 5:18.99 |
| 68 | Douglas SetoPlace 68 · Grade 10 · Summit Shasta (CC) | 10 | Summit Shasta (CC) | 5:19.06 |
| 69 | Jeffrey LiuPlace 69 · Grade 9 · The Nueva School (CC) | 9 | The Nueva School (CC) | 5:20.11 |
| 70 | Luke SpaldingPlace 70 · Grade 11 · Convent & Stuart Hall (NC) | 11 | Convent & Stuart Hall (NC) | 5:20.26 |
| 71 | Kota WakabayashiPlace 71 · Grade 10 · Galileo Academy of Science & T | 10 | Galileo Academy of Science & T | 5:20.79 |
| 72 | Jacob HiguchiPlace 72 · Grade 10 · The King's Academy | 10 | The King's Academy | 5:24.62 |
| 73 | Cedric GingrichPlace 73 · Grade 12 · Galileo Academy of Science & T | 12 | Galileo Academy of Science & T | 5:25.85 |
| 74 | Brendan Kelly PagePlace 74 · Grade 10 · Washington (George) (SF) | 10 | Washington (George) (SF) | 5:26.35 |
| 75 | Benjamin EkissPlace 75 · Grade 9 · Lowell (SF) | 9 | Lowell (SF) | 5:28.58 |
| 76 | Zachary KwakPlace 76 · Grade 10 · The King's Academy | 10 | The King's Academy | 5:28.90 |
| 77 | Emerson Chih-WangPlace 77 · Grade 10 · Lowell (SF) | 10 | Lowell (SF) | 5:29.57 |
| 78 | Ryan ChowPlace 78 · Grade 10 · Bay School of San Francisco (N | 10 | Bay School of San Francisco (N | 5:30.28 |
| 79 | Javier VillamilPlace 79 · Grade 9 · Convent & Stuart Hall (NC) | 9 | Convent & Stuart Hall (NC) | 5:31.89 |
| 80 | Dhruv ShetPlace 80 · Grade 12 · The King's Academy | 12 | The King's Academy | 5:33.19 |
| 81 | Arthur LiangPlace 81 · Grade 10 · Summit Shasta (CC) | 10 | Summit Shasta (CC) | 5:33.95 |
| 82 | Jason YuPlace 82 · Grade 11 · Lowell (SF) | 11 | Lowell (SF) | 5:34.23 |
| 83 | Jake TuPlace 83 · Grade 9 · Lowell (SF) | 9 | Lowell (SF) | 5:36.39 |
| 84 | Findon CampbellPlace 84 · Grade 9 · Lowell (SF) | 9 | Lowell (SF) | 5:37.32 |
| 85 | Asher NamPlace 85 · Grade 10 · The King's Academy | 10 | The King's Academy | 5:38.30 |
| 86 | Jacky LawPlace 86 · Grade 12 · Lowell (SF) | 12 | Lowell (SF) | 5:38.45 |
| 87 | Logan WaltersPlace 87 · Grade 12 · Soquel (CC) | 12 | Soquel (CC) | 5:38.80 |
| 88 | Agastya PalathuruthilPlace 88 · Grade 9 · Convent & Stuart Hall (NC) | 9 | Convent & Stuart Hall (NC) | 5:39.57 |
| 89 | Luca TomPlace 89 · Grade 9 · Lowell (SF) | 9 | Lowell (SF) | 5:40.08 |
| 90 | Raymond ShiuPlace 90 · Grade 12 · Galileo Academy of Science & T | 12 | Galileo Academy of Science & T | 5:41.53 |
| 91 | Blaise PascalPlace 91 · Grade 9 · Bay School of San Francisco (N | 9 | Bay School of San Francisco (N | 5:42.02 |
| 92 | Felix WuPlace 92 · Grade 12 · Washington (George) (SF) | 12 | Washington (George) (SF) | 5:42.90 |
| 93 | Isaac LinPlace 93 · Grade 9 · Lowell (SF) | 9 | Lowell (SF) | 5:45.14 |
| 94 | Brandon DangPlace 94 · Grade 10 · Galileo Academy of Science & T | 10 | Galileo Academy of Science & T | 5:45.29 |
| 95 | Austin LiPlace 95 · Grade 12 · Washington (George) (SF) | 12 | Washington (George) (SF) | 5:46.24 |
| 96 | Aiden BatesPlace 96 · Grade 9 · Lowell (SF) | 9 | Lowell (SF) | 5:46.67 |
| 97 | Tsz Him Rico WanPlace 97 · Grade 10 · Washington (George) (SF) | 10 | Washington (George) (SF) | 5:48.99 |
| 98 | Max LanzendorfPlace 98 · Grade 12 · San Domenico (NC) | 12 | San Domenico (NC) | 5:49.31 |
| 99 | Pierce QuigleyPlace 99 · Grade 11 · Convent & Stuart Hall (NC) | 11 | Convent & Stuart Hall (NC) | 5:50.21 |
| 100 | Adam AranjoPlace 100 · Grade 10 · The King's Academy | 10 | The King's Academy | 5:50.89 |
| 101 | Andy LiPlace 101 · Grade 10 · The King's Academy | 10 | The King's Academy | 5:50.95 |
| 102 | Eric KocherPlace 102 · Grade 11 · Bay School of San Francisco (N | 11 | Bay School of San Francisco (N | 5:53.56 |
| 103 | Alejandro GilPlace 103 · Grade 10 · Pacific Bay Christian (CC) | 10 | Pacific Bay Christian (CC) | 5:53.63 |
| 104 | Rolan WongPlace 104 · Grade 10 · Summit Shasta (CC) | 10 | Summit Shasta (CC) | 5:54.51 |
| 105 | Freddie IbanezPlace 105 · Grade 9 · The King's Academy | 9 | The King's Academy | 5:55.60 |
| 106 | Ryan LucPlace 106 · Grade 12 · Washington (George) (SF) | 12 | Washington (George) (SF) | 6:02.11 |
| 107 | Graydon GardenPlace 107 · Grade 10 · Bay School of San Francisco (N | 10 | Bay School of San Francisco (N | 6:03.96 |
| 108 | Tarick ZhengPlace 108 · Grade 11 · Summit Shasta (CC) | 11 | Summit Shasta (CC) | 6:05.00 |
| 109 | Joaquin Martinez-SunPlace 109 · Grade 9 · Mission (SF) | 9 | Mission (SF) | 6:06.21 |
| 110 | Rex MoorePlace 110 · Grade 9 · Mission (SF) | 9 | Mission (SF) | 6:14.77 |
| 111 | Nolen BurkhardtPlace 111 · Grade 9 · Lowell (SF) | 9 | Lowell (SF) | 6:15.18 |
| 112 | William LvPlace 112 · Grade 9 · The King's Academy | 9 | The King's Academy | 6:24.52 |
| 113 | Donggeon ShinPlace 113 · Grade 10 · The King's Academy | 10 | The King's Academy | 6:38.81 |
| 114 | Noah PacificoPlace 114 · Grade 9 · Lowell (SF) | 9 | Lowell (SF) | 6:41.46 |
| 115 | Michael HauserPlace 115 · Grade 10 · The King's Academy | 10 | The King's Academy | 6:42.34 |
| 116 | Corban WuPlace 116 · Grade 9 · The King's Academy | 9 | The King's Academy | 7:27.69 |
| 117 | Asher GrossmanPlace 117 · Grade 10 · Washington (George) (SF) | 10 | Washington (George) (SF) | 8:28.92 |