| 1 | Jaime GachuzoPlace 1 · Grade 12 · Del Lago Academy | 12 | Del Lago Academy | 16:29.39 |
| 2 | Evan SmithPlace 2 · Grade 12 · Santa Fe Christian | 12 | Santa Fe Christian | 16:42.06 |
| 3 | Valentino AguirrePlace 3 · Grade 12 · Del Lago Academy | 12 | Del Lago Academy | 17:14.61 |
| 4 | Max LesniewskiPlace 4 · Grade 11 · Del Lago Academy | 11 | Del Lago Academy | 17:25.98 |
| 5 | Esteban Contreras-NicolPlace 5 · Grade 12 · Santa Fe Christian | 12 | Santa Fe Christian | 17:54.32 |
| 6 | Christian SolorzanoPlace 6 · Grade 12 · Del Lago Academy | 12 | Del Lago Academy | 18:04.85 |
| 7 | Ryan SalamiPlace 7 · Grade 11 · La Jolla Country Day | 11 | La Jolla Country Day | 18:09.04 |
| 8 | David ReyesPlace 8 · Grade 10 · Del Lago Academy | 10 | Del Lago Academy | 18:20.60 |
| 9 | Owen WatsonPlace 9 · Grade 10 · Santa Fe Christian | 10 | Santa Fe Christian | 18:24.01 |
| 10 | Aaron GussPlace 10 · Grade 11 · La Jolla Country Day | 11 | La Jolla Country Day | 18:39.76 |
| 11 | Andres LopezPlace 11 · Grade 9 · Del Lago Academy | 9 | Del Lago Academy | 18:46.46 |
| 12 | Joshua JohnPlace 12 · Grade 12 · Santa Fe Christian | 12 | Santa Fe Christian | 18:51.55 |
| 13 | Zachary NelsonPlace 13 · Grade 11 · Escondido Charter | 11 | Escondido Charter | 19:02.44 |
| 14 | Austen BoydPlace 14 · Grade 11 · Francis Parker | 11 | Francis Parker | 19:06.37 |
| 15 | Caleb NelsonPlace 15 · Grade 9 · Escondido Charter | 9 | Escondido Charter | 19:08.68 |
| 16 | Will ForrestPlace 16 · Grade 10 · Francis Parker | 10 | Francis Parker | 19:09.57 |
| 17 | Parker BattersonPlace 17 · Grade 12 · Francis Parker | 12 | Francis Parker | 19:09.92 |
| 18 | Nick RechelPlace 18 · Grade 9 · The Bishop's School | 9 | The Bishop's School | 19:12.37 |
| 19 | Naveen VemulapalliPlace 19 · Grade 12 · The Bishop's School | 12 | The Bishop's School | 19:13.91 |
| 20 | Wyatt ArnoldPlace 20 · Grade 10 · Francis Parker | 10 | Francis Parker | 19:22.46 |
| 21 | Monte DuValPlace 21 · Grade 10 · Francis Parker | 10 | Francis Parker | 19:31.02 |
| 22 | Ayaan MahmudPlace 22 · Grade 10 · The Bishop's School | 10 | The Bishop's School | 19:34.80 |
| 23 | Bodhi LandinPlace 23 · Grade 9 · The Bishop's School | 9 | The Bishop's School | 19:35.72 |
| 24 | Nicholas RodriguePlace 24 · Grade 10 · Santa Fe Christian | 10 | Santa Fe Christian | 19:39.71 |
| 25 | Felix DittmarPlace 25 · Grade 9 · La Jolla Country Day | 9 | La Jolla Country Day | 19:42.33 |
| 26 | Daniel RobbinsPlace 26 · Grade 10 · Escondido Charter | 10 | Escondido Charter | 19:42.96 |
| 27 | Wesley ShermanPlace 27 · Grade 9 · Escondido Charter | 9 | Escondido Charter | 19:45.23 |
| 28 | Wyatt BianchiPlace 28 · Grade 11 · Santa Fe Christian | 11 | Santa Fe Christian | 19:54.18 |
| 29 | Gavin GinsbergPlace 29 · Grade 9 · Pacific Ridge | 9 | Pacific Ridge | 20:21.46 |
| 30 | Luke FullerPlace 30 · Grade 12 · La Jolla Country Day | 12 | La Jolla Country Day | 20:31.12 |
| 31 | Nico BravoPlace 31 · Grade 9 · The Bishop's School | 9 | The Bishop's School | 20:37.03 |
| 32 | Jason BradyPlace 32 · Grade 12 · Escondido Charter | 12 | Escondido Charter | 20:43.41 |
| 33 | Jonah BramePlace 33 · Grade 11 · Escondido Charter | 11 | Escondido Charter | 20:46.54 |
| 34 | Matthew DuBoisPlace 34 · Grade 11 · La Jolla Country Day | 11 | La Jolla Country Day | 20:55.82 |
| 35 | Dylan KlapperPlace 35 · Grade 10 · Pacific Ridge | 10 | Pacific Ridge | 21:01.12 |
| 36 | Nathan HongPlace 36 · Grade 10 · The Bishop's School | 10 | The Bishop's School | 21:06.99 |
| 37 | Edwin KwanPlace 37 · Grade 11 · La Jolla Country Day | 11 | La Jolla Country Day | 21:20.38 |
| 38 | Rodolfo Cevallos-FernanPlace 38 · Grade 10 · La Jolla Country Day | 10 | La Jolla Country Day | 21:21.20 |
| 39 | Evan BohnePlace 39 · Grade 12 · Francis Parker | 12 | Francis Parker | 21:30.46 |
| 40 | Samuel ReggevPlace 40 · Grade 12 · Francis Parker | 12 | Francis Parker | 21:30.55 |
| 41 | Jackson BushPlace 41 · Grade 10 · Pacific Ridge | 10 | Pacific Ridge | 21:31.79 |
| 42 | Lucas SitPlace 42 · Grade 12 · Santa Fe Christian | 12 | Santa Fe Christian | 21:41.55 |
| 43 | Jason HouchinPlace 43 · Grade 12 · Escondido Charter | 12 | Escondido Charter | 21:51.16 |
| 44 | Tyler DurinaPlace 44 · Grade 9 · Pacific Ridge | 9 | Pacific Ridge | 21:54.94 |
| 45 | Austin ShroyerPlace 45 · Grade 11 · Pacific Ridge | 11 | Pacific Ridge | 21:58.07 |
| 46 | Lucas ContrerasPlace 46 · Grade 10 · Santa Fe Christian | 10 | Santa Fe Christian | 22:15.34 |
| 47 | Christopher WellischPlace 47 · Grade 9 · Pacific Ridge | 9 | Pacific Ridge | 22:55.14 |
| 48 | Erick GomezPlace 48 · Grade 10 · Pacific Ridge | 10 | Pacific Ridge | 23:19.85 |